References: Breeding for salt tolerance

 

Apse MP, Aharon GS, Sneddon WA, Blumwald E. 1999. Salt tolerance conferred by overexpression of a vacuolar Na+/H+ antiport in Arabidopsis. Science 285: 1256-1258.

 

Baker J, Steele C, Dure L III. 1988. Sequence and characterization of six LEA proteins and their genes in cotton. Plant Mol Biol 11: 277-291.

 

Blumwald E, aharon GS, Apse MP. 2000. Sodium transport in plant cells. Biochimica et Biophysica Acta 1465: 140-151.

 

Bohnert HJ, Nelson DE, Jensen RG. 1995. Adaptations to environmental stresses. The Plant Cell 7: 1099-111.

 

Bray E. 1997. Plant responses to water deficit. Trends Plant Sci 2: 48-54.

 

Chourey K, Ramani S, Apte SK. 2003. Accumulation of LEA proteins in salt (NaCL) stressed young seedlings of rice (Oryza sativa L.) cultivar Bura Rata and their degradation during recovery from salinity stress. J. Plant Physiol. 160, 1165-1174.

 

Cregan PB, Mudge J, Fickus EW, Danesh D, Denny R, Young ND. 1999. Two simple sequence repeat markers to select for soybean cyst nematode resistance conditioned by the rhgl locus. Theoretical and Applied Genetics 99, 811-818.

 

Ding, H.Y., Zhang,Y., Guo, Y., Chen, S.L., Chen, S.Y. 1998. RAPD tagging of a salt tolerant gene in rice. Chinese Science Bulletin 43: 330-332.

 

Dure L III. 1992. The LEA proteins of higher plants. In: Verma DPS (ed) Control of Plant Gene Expression. CRC Press, Boca Raton, FL, pp 325-369.

 

Flowers, TJ .2004. Improving crop salt tolerance. Journal of Exp. Botany. 55, no. 396, 307-319

 

Flowers TJ, Koyama ML, Flowers SA, Sudhakar C, Singh KP and Yeo AR. QTL: their place in engineering tolerance of rice to salinity. The Journal of Experimental Botany, Col. 51, No. 342.

 

Flowers TJ, Troke PF, Yeo AR. 1977. The mechanisms of salt tolerance in halophytes. Annual Review of Plant Physiology 28: 89-121.

 

Fukuda A, Nakamura A, Tagiri A, Tanaka H, Miyao A, Hirochika H, and Tanaka Y. 2004. Function, Intracellular Localization and the Importance in Salt Tolerance of a Vacuolar Na+/H+ antiporter from Rice. The Plant Cell Physio. 45(2): 146-159.

 

Garciadeblas B, Senn ME, Bañuelos MA, and Rodriquez-Navarro A. 2003. Sodium transport and HKT transporters: the rice model. The Plant Journal. 34, 788-801.

 

Garg AK, Kim J-K, Owens TG, Ranwala AP, Choi YD, Kochian LV, Wu RJ. 2002. Trehalose accumulation in rice plants confers high tolerances levels to different abiotic stresses. Proceedings of the National Academy of Sciences of the USA 99: 15898-15903.

 

Guo Y, Qui QH, Wuintero FJ, Pardo JM, Ohta M, Zhang C., Schumaker KS, and Zhu JK. 2004.  Transgenic Evaluation of Activated Mutant alleles of SOS2 Reveals a Critical Requirement for Its Kinase Activity and C-Terminal Regulatory Domain for Salt Tolerance in Arabidopsis thaliana. The Plant Cell, Vo. 16, 435-449.

 

Halfter U, Ishtani M, Zhu JK. 2000. The Arabidopsis SOS2 protein knase physically interacts with and is activated by the calium-binding protein SOS3. Proceedings of the National Academy of Sciences of the USA 97: 3735-3740.

IRRI. 1988. Standard evaluation system for rice (1988). 3rd Edition, IRRI, Philippines.

 

IRRI.1997. Program report for 1996. IRRI, Philippines.

 

Ishitani M, Liu JP, Halfter U, Kim CS, Shi WM Zhu JK. 2000. SOS3 function in plant salt tolerance requires N-myristoylation and calcium binding. Plant Cell 12: 1667-1677.

 

Johnson MK, Johnson EJ, MacElroy RD, Speer HL, Bruff BS, 1968. Effects of salts on the halophilic alga Dunaliella viridis, Journal of Bacterilogy  95: 1461-1468.

 

Lang, T.N., Yanagihara, S. and Buu, B.C. 2001. A microsatellite marker for a gene conferring salt in rice at the vegetative and reproductive stages. SABRAO J. Breed. Genet., 33 (1): 1-10.

 

Liu J, Zhu K-K. 1998. A calcium sensor homolog required for plant salt tolerance. Science 280: 1943-1945.

 

Luby JJ, Shaw DV. 2001. Does marker-assisted selection make dollars and sense in a fruit breeding program?

 

Mishra, B., Singh, R. K. and Bhattacharya, R. K. 1992. CSR10, a newly released dwarf rice for salt affected soils.  IRRN, 17(1):19.

 

Mishra, B., Singh, R. K. and Jetly, Vandna. 1998. Inheritance pattern of salinity tolerance in rice. Journal of Genetics & Breeding (Rome) 52: 325-331.

 

Moons A, Bauw G, Prinse E, Montagu MV, Van der Straeten D. 1995. Molecular and physiological responses to abscisic acid and salts in roots of salt-sensitive and salt-tolerant indica rice varieties. Plant Phisiol 107: 177-186.

 

Polle, A. 2001. Dissecting the superoxide dismutase-ascorbate-glutathione-pathway in chloroplasts by metabolic modeling, Computer simulations as a step towards flux analysis, Plant Physiol. 126. 445-462.

 

Prasad, S.R., Bagli, PG, Hittalmani, S. and Shashidhar, H.E.2000. Molecular mapping of quantitative trait loci associated with seedling tolerance of salt stress in rice  (Oryza sativa L.). Current Science, 78 : 162-164.  

 

Singh, R. K. and Mishra, B. 1997. Stable genotypes of rice for sodic soils. Ind. J. Genet. 57(4): 431-438.

Qui Q-S, Guo Y, Dietrich MA, Schumaker KS, Zhu J-K. 2002. regulation of SOS1, a plasma membrane Na+/H+ exchanger in Arabidopsis thaliana, by SOS2 and SOS3. Proceedings of the National Academy of Sciences of the USA 99: 8436-8441.

 

Quintero FJ, Ohta M, Shi H, Zhu J-K, Pardo JM. 2002. Reconstitution in yeast of the Arabidopsis SOS signaling pathway for Na+ homeostasis. Proceedings of the National Academy of Sciences of the USA 99: 9061-9066.

 

R. Mittler, 2002. Oxidative stress, anioxidants and stress tolerance, Trends Plant Sci. 7 :405-410.

 

Ren ZH, Gao JP, Li LG, Cai XL, Huang W, Chao DY, Zhu MZ, Wang ZY, Luan S, and Lin HX. 2005. A rice quantitative trait locus for salt tolerance encodes a sodium transport. Nature Genetics Vol 37, No. 10.

 

Seki M, Narusaka M, Abe H, Kasuga M, Yamaguchi-Shinozaki K, Carninci P, Hayashizaki Y, and Shinozaki K. 2001. Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray. Plant Cell 13: 61-72.

 

Shinozaki K, and Yamaguchi Shinozaki Y. 2000. Molecular responses to dehydration and low temperature: differences and cross-talk between two stress signaling pathways. Plant Biol. 3: 217-223.

 

Singh, R. K., Mishra, B. and Jetly, Vandna. 2001 Segregations for alkalinity tolerance in

three rice crosses. SABRAO Journal 33(1): 31-34.

 

Singh, R. K., Mishra, B., Chauhan, M. S., Yeo, A. R., Flowers, S. A. and Flowers, T. J. 2002. Solution culture for screening rice varieties for sodicity tolerance. Journal of Agricultural Science, Cambridge (UK). 139: 327-333.

 

Singh, R. K., Singh, N. K. and Mishra, B. 2002. Identification of genes for physiological mechanisms for salinity tolerance and pyramiding through marker assisted selection. Paper presented during “Rice Functional Genomics Workshop” held at National Research Centre on Plant Biotechnology, IARI, New Delhi on May 20-21,2002. Abstract Proceeding page 27.

 

Sinha, T.S. 1997. Evaluation and breeding of Indian mustard (B. juncea) for salt tolerance. In:  Annual Report, CSSRI, Karnal, 1996-97. pp 52-53.  

 

Staal M, Maathuis FJM, Elzenga TM, Overbeek HM, Prins HBA. 1991. Na+/H+ antiport activity in tonoplast vesicles from roots of the salt-tolerant Plantago maritime and the salt-sensitive Plantago media. Physiologia Plantarum 82: 179-184.

 

Stuber CW. 1998. In ‘Molecular Dissection of Complex Traits’. (Ed. Paterson AH) pp 197-206. (CRC Press, Boca Raton, FL).

 

Yeo, A. R. and Flowers, T. J. 1983. Varietal differences in the toxicity of sodium ions in rice leaves. Physiologia Plantarum 59 : 189 - 195.

 

Young ND, Tanksley SD. 1989. RFLP analysis of the size of chromosomal segments retained around the Tm-2 locus of tomato during backcross breeding. Theroretical and Applied Genetics 77, 353-359.

 

Zamir D. 2001. Improving plant breeding with exotic genetic libraries. Nature Reviews 2, 983-989.

 

Zhang H-X, Blumwald E. 2001. Transgenic salt-tolerant tomato plants accumulate salt in foliage but not in fruit. Nature Biotechnology 19: 765-768.

 

Zhang H-X, Hodson JN, Williams JP, Blumwald E.  2001. Engineering salt-tolerant Brassica plants: Characterization of yield and seed oil quality in transgenic plants with increased vacuolar sodium accumulation. Proceedings of the National Academy of Sciences of the USA 98: 12832-12836.

 

Zhang, G.Y., Guo, Y., Chen, S.L., Chen, S.Y. 1995.  RFLP tagging of a salt tolerance gene in rice. Plant Science 110: 227-234 .

 

For QTL & MAS on salinity:

Ammar M.H.M. 2004. Molecular mapping of salt tolerance in rice. Ph. D. Thesis, Indian Agricultural Research Institute, New Delhi, India.

 

Bonilla, P.S., J. Dvorak, D. Mackill, K. Deal, and G. Gregorio. 2002. RFLP and SSLP mapping of salinity tolerance genes in chromosome 1 of rice (Oryza sativa L.) using recombinant inbred lines. The Philippines Agricultural Scientist. 85(1):64-74.

 

Gregorio, G.B., D. Senadhira, R.D. Mendoza, N.L. Manigbas, J.P. Roxas and C.Q. Guerta, 2002. Progress in breeding for salinity tolerance and other abiotic associated stresses in rice. Field Crops Res.

 

Gregorio, G.B. 1997. Tagging salinity tolerance genes in rice using amplified fragment length polymorphism (AFLP). [Ph.D. dissertation. College, Laguna, Philippines: University of the Philippines Los Baños, Laguna pp 118.

 

Koyama, M.L, A. Levesley, R.M.D. Koebner, T.J. Flowers and A.R. Yeo. 2001. Quantitative trait loci for component physiological traits determining salt tolerance in rice. Plant Physiology. 125:406-422.  

 

Lee, S.Y., J.H. Ahn, Y.S. Cha, D.W. Yun, M.C. Lee, J.C. Ko, K.S. Lee and M.Y. Eun. 2006. Mapping of Quantitative Trait Loci for salt tolerance at the seedling stage in rice. Mol. Cells, 21 (2): 192-196.

 

Lin, H.X., M.Z. Zhu, M. Yano, J.P. Gao, Z.W. Liang, W.A. Su, X.H. Hu, Z.H. Ren and

D.Y. Chao. 2004. QTLs for Na+ and K+ uptake of the shoots and roots controlling rice salt tolerance. Theor. Appl. Genet. 108: 253-260.

 

Singh, RK ; D.L. Adorada; C. Magsino; Z. Roque; N. Tamayo and G.B. Gregorio. 2005.  Temperature and relative humidity affect salinity tolerance in rice. In Abstract proceedings of 10th SABRAO International Congress of SABRAO held at Tsukuba, Japan, August 22-23. Pages L-2.  

 

Islam, MR ; M.A. Salam; L. Hassan; B.C.Y. Collard; R.K. Singh  and G.B Gregorio. 2006. QTL Mapping for Salinity Tolerance at Seedling Stage in Rice. (Communicated).